Protein Analysis FAQ
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Q1: Does protein sequencing require the protein to remain active? A1: No. Protein sequencing focuses on determining the amino acid sequence, not the biological activity of the protein. Whether using Edman degradation or mass spectrometry, the functional state of the protein has no impact on sequencing accuracy. In fact, most sequencing workflows—including reduction, alkylation, digestion, and ionization—disrupt the protein’s native structure and eliminate biological activity. What matters
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• What Are the Applications of Proteomics in Medicine and Health
Proteomics plays a critical role in medicine and health, with key applications in areas such as disease diagnosis, drug development, biomarker discovery, and personalized medicine. Below are several specific applications: 1. Disease Diagnosis Proteomic technologies enable the identification of disease-specific proteins or proteomic alterations, which can serve as diagnostic biomarkers. For instance, analyzing the protein composition in a patient’s blood can facilitate the diagnosis of cancers........
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Certainly. High performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) is a widely applied technique in bioanalytical research. In this method, high performance liquid chromatography (HPLC) serves to separate components from complex matrices, while the tandem mass spectrometer (MS/MS) is employed for the accurate detection and quantification of these separated analytes. By integrating the separation power of HPLC with the sensitivity and precision of mass spectrometry, HPLC-MS/MS enables...
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• What Are the Methods for Detecting Proteins Based on SDS-PAGE Besides Gel Electrophoresis
Sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE) is a widely adopted technique for the separation and analysis of proteins. In addition to gel electrophoresis itself, several complementary methods can be integrated with SDS-PAGE to enhance detection sensitivity and improve protein identification accuracy: 1. Western Blot Following SDS-PAGE separation, proteins are transferred onto a membrane and subsequently probed with specific antibodies that bind to the target proteins.
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• How to Conduct Liquid Chromatography Analysis
High-Performance Liquid Chromatography (HPLC) is a highly accurate and efficient technique for separation and quantitative analysis, widely applied in chemistry, pharmaceuticals, food safety, environmental science, and biomedical research. The following outlines the fundamental steps involved in HPLC analysis: 1. Sample Preparation Prior to analysis, the sample must undergo proper pretreatment—such as extraction, purification, or spiking—to ensure it is compatible with chromatographic flow and can be.......
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• Can High Performance Liquid Chromatography-Tandem Mass Spectrometry Be Quantitative
High Performance Liquid Chromatography-Tandem Mass Spectrometry (HPLC-MS/MS) is a powerful and widely employed analytical technique in the field of bioanalysis. In HPLC-MS/MS, High Performance Liquid Chromatography (HPLC) serves to separate components within complex matrices, while tandem mass spectrometry (MS/MS) enables precise detection and quantification of the separated analytes. By integrating the separation efficiency of HPLC with the high sensitivity and specificity of MS/MS, this technique ........
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• Why Are Some Ion Sources Suitable for Mass Spectrometry Imaging While Others Are Not
Mass spectrometry imaging (MSI) is a technique that applies mass spectrometry to visualize the chemical composition and relative abundance on sample surfaces. The choice of ion source plays a pivotal role in MSI. While some ion sources are compatible with this technique, others are not. This discrepancy is primarily determined by the following factors: 1. Spatial Resolution High spatial resolution is essential for acquiring well-defined images in MSI. Ion sources such as matrix-assisted laser desorption....
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• What Is the Cost of Performing an HPLC-MS or GC-MS Analysis
The cost of HPLC-MS and GC-MS analyses varies considerably depending on factors such as experimental conditions, the equipment used, and the types of reagents and consumables required. Key cost-determining elements include: 1. Equipment Cost The purchase price of HPLC-MS and GC-MS systems varies based on the brand, specifications, and functionalities. Typically, instrument costs range from several hundred thousand to several million RMB. 2. Reagents and Consumables This category includes chromatography.....
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• How to draw a motif diagram using peptide data obtained from MS/MS
Peptide data derived from tandem mass spectrometry (MS/MS) can be utilized to construct protein motif logos, enabling deeper insights into the characteristics of protein sequences and post-translational modifications (PTMs). The general workflow for generating motif logos is outlined below: 1. Data Processing Initially, process the peptide data obtained from MS/MS to extract relevant information, including amino acid sequences, modification statuses, and confidence levels of identification. 2. Selection....
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• What Mass Spectrometer is Generally Used for Peptide Identification
Q-TOF is a frequently used instrument for peptide identification due to its high resolution and precise mass measurement capabilities. The most commonly employed mass spectrometers for peptide identification include: 1. Orbitrap Series (e.g., Orbitrap Fusion Lumos) These instruments offer high resolution and excellent mass accuracy, making them well-suited for the in-depth analysis of complex biological samples. 2. Q-TOF (Quadrupole-Time of Flight Mass Spectrometer) This type of spectrometer combines the...
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