Resources

Proteomics Databases



Metabolomics Databases

• • Overview of Protein Sequencing: Advantages and Limitations

  Proteins act as the primary executors of biological functions, with their structure and functionality intricately dependent on the precise arrangement of amino acid sequences. Protein sequencing technology serves as a crucial bridge linking genomics and phenotypic research, advancing our comprehension of biological systems. Utilizing high-resolution mass spectrometry, protein sequencing enables comprehensive qualitative and quantitative characterization of proteins by analyzing peptide fragmentation .......

• • Recommendations for 5 Commonly Used Protein Sequence Alignment Tools

  Introduction: Why Is Protein Sequence Alignment so Important? The function of a protein is often reflected in its amino acid sequence. Conserved regions, active sites, and modification sites within the sequence serve as critical indicators for predicting protein function. By aligning a target sequence with known protein sequences in public databases, researchers can: annotate the functions of uncharacterized proteins; identify homologous proteins and evolutionary relationships; detect domains, binding......

• • How to Choose the Right Protein Sequencing Technology?

  Protein sequencing is a fundamental technique for investigating protein structure and function. It plays a critical role in biomedical research and drug development, including target discovery, mechanism elucidation, biomarker identification, and antibody characterization. With continuous advancements in mass spectrometry and chemical sequencing methods, an increasing number of protein sequencing technologies have become available. These technologies differ significantly in their suitable applications......

• • Latest Applications of AI in Protein Sequencing

  In the current era of AI-driven transformation in the life sciences, artificial intelligence (AI) is redefining the technological framework of protein sequencing. From structural prediction to de novo sequencing, from identification of post-translational modification (PTM) sites to sequence reconstruction, AI technologies are being increasingly integrated into all facets of protein analysis. These advancements not only enhance efficiency and reduce error rates but also empower researchers to better manage..

• • What Tools Are Used for Protein Sequence Analysis? A Summary of Common Methods and Techniques

  In fields such as proteomics, structural biology, functional annotation, and drug discovery, protein sequence analysis frequently serves as a foundational step in research. This type of analysis not only determines the primary structure of proteins but also supports the prediction of molecular features such as functional domains, signal peptides, transmembrane regions, post-translational modification sites, and linear antigenic epitopes. It constitutes a critical component in identifying potential targets..

• • Role of Protein Primary Structure in Functional Prediction

  In life sciences, the principle that "structure determines function" is almost universally accepted. In the context of protein research, "structure" refers to a hierarchical system that begins with the primary structure (amino acid sequence) and extends through secondary, tertiary, and quaternary levels, each contributing incrementally to the protein's functional potential. Among these, the primary structure—namely, the amino acid sequence—serves not only as the foundation for the formation of the three....

• • Guide to Protein Sequence Alignment and Homology Analysis

  Protein sequence alignment and homology analysis are essential tools in numerous areas of biological research, including protein function annotation, structure prediction, and evolutionary studies. By comparing amino acid sequences, researchers can rapidly infer the function of uncharacterized proteins, identify conserved domains, and trace the evolutionary history of protein families. This approach is grounded in the principle that conservation of protein structure and function is often mirrored in .......

• • How to Use Protein Sequence Analysis for Functional Prediction?

  With the rapid advancement of high-throughput sequencing technologies, an increasing number of novel proteins have been identified. However, a significant proportion of these proteins remain functionally unannotated. In this context, protein sequence analysis serves as an essential initial step toward understanding protein function. This review systematically summarizes widely adopted strategies for protein sequence analysis and discusses how the integration of multiple bioinformatics tools can enhance.....

• • What Is the Difference between DNA Sequencing and Protein Sequencing?

  In contemporary life science research, DNA sequencing and protein sequencing are two essential and foundational technologies, yet they differ substantially in terms of research objectives, methodological approaches, and biological significance. Broadly speaking, DNA sequencing reveals the blueprint of genetic information, whereas protein sequencing characterizes the functional status of the biological effectors. As precision medicine and multi-omics integration continue to advance, a clear understanding....

• • Chemical Probe Technologies and Applications in Chemical Proteomics

  In life sciences, the expression level of a protein does not necessarily reflect its functional state. Although proteomics can reveal changes in protein abundance under varying conditions, it often fails to capture the subset of proteins that are functionally active. To address this limitation, the field of chemical proteomics has emerged. Within this discipline, chemical probe technology plays a pivotal role. By designing chemical probes with tailored reactivity toward specific protein functionalities.....